rocksdb/util/file_checksum_helper.cc

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// Copyright (c) 2011-present, Facebook, Inc. All rights reserved.
// This source code is licensed under both the GPLv2 (found in the
// COPYING file in the root directory) and Apache 2.0 License
// (found in the LICENSE.Apache file in the root directory).
//
// Copyright (c) 2011 The LevelDB Authors. All rights reserved.
// Use of this source code is governed by a BSD-style license that can be
// found in the LICENSE file. See the AUTHORS file for names of contributors.
#include "util/file_checksum_helper.h"
#include <unordered_set>
#include "db/log_reader.h"
#include "db/version_edit.h"
#include "db/version_edit_handler.h"
#include "file/sequence_file_reader.h"
#include "rocksdb/utilities/customizable_util.h"
namespace ROCKSDB_NAMESPACE {
void FileChecksumListImpl::reset() { checksum_map_.clear(); }
size_t FileChecksumListImpl::size() const { return checksum_map_.size(); }
Status FileChecksumListImpl::GetAllFileChecksums(
std::vector<uint64_t>* file_numbers, std::vector<std::string>* checksums,
std::vector<std::string>* checksum_func_names) {
if (file_numbers == nullptr || checksums == nullptr ||
checksum_func_names == nullptr) {
return Status::InvalidArgument("Pointer has not been initiated");
}
for (const auto& i : checksum_map_) {
file_numbers->push_back(i.first);
checksums->push_back(i.second.first);
checksum_func_names->push_back(i.second.second);
}
return Status::OK();
}
Status FileChecksumListImpl::SearchOneFileChecksum(
uint64_t file_number, std::string* checksum,
std::string* checksum_func_name) {
if (checksum == nullptr || checksum_func_name == nullptr) {
return Status::InvalidArgument("Pointer has not been initiated");
}
auto it = checksum_map_.find(file_number);
if (it == checksum_map_.end()) {
return Status::NotFound();
} else {
*checksum = it->second.first;
*checksum_func_name = it->second.second;
}
return Status::OK();
}
Status FileChecksumListImpl::InsertOneFileChecksum(
uint64_t file_number, const std::string& checksum,
const std::string& checksum_func_name) {
auto it = checksum_map_.find(file_number);
if (it == checksum_map_.end()) {
checksum_map_.insert(std::make_pair(
file_number, std::make_pair(checksum, checksum_func_name)));
} else {
it->second.first = checksum;
it->second.second = checksum_func_name;
}
return Status::OK();
}
Status FileChecksumListImpl::RemoveOneFileChecksum(uint64_t file_number) {
auto it = checksum_map_.find(file_number);
if (it == checksum_map_.end()) {
return Status::NotFound();
} else {
checksum_map_.erase(it);
}
return Status::OK();
}
FileChecksumList* NewFileChecksumList() {
FileChecksumListImpl* checksum_list = new FileChecksumListImpl();
return checksum_list;
}
std::shared_ptr<FileChecksumGenFactory> GetFileChecksumGenCrc32cFactory() {
static std::shared_ptr<FileChecksumGenFactory> default_crc32c_gen_factory(
new FileChecksumGenCrc32cFactory());
return default_crc32c_gen_factory;
}
Status GetFileChecksumsFromManifest(Env* src_env, const std::string& abs_path,
uint64_t manifest_file_size,
FileChecksumList* checksum_list) {
if (checksum_list == nullptr) {
return Status::InvalidArgument("checksum_list is nullptr");
}
assert(checksum_list);
Group SST write in flush, compaction and db open with new stats (#11910) Summary: ## Context/Summary Similar to https://github.com/facebook/rocksdb/pull/11288, https://github.com/facebook/rocksdb/pull/11444, categorizing SST/blob file write according to different io activities allows more insight into the activity. For that, this PR does the following: - Tag different write IOs by passing down and converting WriteOptions to IOOptions - Add new SST_WRITE_MICROS histogram in WritableFileWriter::Append() and breakdown FILE_WRITE_{FLUSH|COMPACTION|DB_OPEN}_MICROS Some related code refactory to make implementation cleaner: - Blob stats - Replace high-level write measurement with low-level WritableFileWriter::Append() measurement for BLOB_DB_BLOB_FILE_WRITE_MICROS. This is to make FILE_WRITE_{FLUSH|COMPACTION|DB_OPEN}_MICROS include blob file. As a consequence, this introduces some behavioral changes on it, see HISTORY and db bench test plan below for more info. - Fix bugs where BLOB_DB_BLOB_FILE_SYNCED/BLOB_DB_BLOB_FILE_BYTES_WRITTEN include file failed to sync and bytes failed to write. - Refactor WriteOptions constructor for easier construction with io_activity and rate_limiter_priority - Refactor DBImpl::~DBImpl()/BlobDBImpl::Close() to bypass thread op verification - Build table - TableBuilderOptions now includes Read/WriteOpitons so BuildTable() do not need to take these two variables - Replace the io_priority passed into BuildTable() with TableBuilderOptions::WriteOpitons::rate_limiter_priority. Similar for BlobFileBuilder. This parameter is used for dynamically changing file io priority for flush, see https://github.com/facebook/rocksdb/pull/9988?fbclid=IwAR1DtKel6c-bRJAdesGo0jsbztRtciByNlvokbxkV6h_L-AE9MACzqRTT5s for more - Update ThreadStatus::FLUSH_BYTES_WRITTEN to use io_activity to track flush IO in flush job and db open instead of io_priority ## Test ### db bench Flush ``` ./db_bench --statistics=1 --benchmarks=fillseq --num=100000 --write_buffer_size=100 rocksdb.sst.write.micros P50 : 1.830863 P95 : 4.094720 P99 : 6.578947 P100 : 26.000000 COUNT : 7875 SUM : 20377 rocksdb.file.write.flush.micros P50 : 1.830863 P95 : 4.094720 P99 : 6.578947 P100 : 26.000000 COUNT : 7875 SUM : 20377 rocksdb.file.write.compaction.micros P50 : 0.000000 P95 : 0.000000 P99 : 0.000000 P100 : 0.000000 COUNT : 0 SUM : 0 rocksdb.file.write.db.open.micros P50 : 0.000000 P95 : 0.000000 P99 : 0.000000 P100 : 0.000000 COUNT : 0 SUM : 0 ``` compaction, db oopen ``` Setup: ./db_bench --statistics=1 --benchmarks=fillseq --num=10000 --disable_auto_compactions=1 -write_buffer_size=100 --db=../db_bench Run:./db_bench --statistics=1 --benchmarks=compact --db=../db_bench --use_existing_db=1 rocksdb.sst.write.micros P50 : 2.675325 P95 : 9.578788 P99 : 18.780000 P100 : 314.000000 COUNT : 638 SUM : 3279 rocksdb.file.write.flush.micros P50 : 0.000000 P95 : 0.000000 P99 : 0.000000 P100 : 0.000000 COUNT : 0 SUM : 0 rocksdb.file.write.compaction.micros P50 : 2.757353 P95 : 9.610687 P99 : 19.316667 P100 : 314.000000 COUNT : 615 SUM : 3213 rocksdb.file.write.db.open.micros P50 : 2.055556 P95 : 3.925000 P99 : 9.000000 P100 : 9.000000 COUNT : 23 SUM : 66 ``` blob stats - just to make sure they aren't broken by this PR ``` Integrated Blob DB Setup: ./db_bench --enable_blob_files=1 --statistics=1 --benchmarks=fillseq --num=10000 --disable_auto_compactions=1 -write_buffer_size=100 --db=../db_bench Run:./db_bench --enable_blob_files=1 --statistics=1 --benchmarks=compact --db=../db_bench --use_existing_db=1 pre-PR: rocksdb.blobdb.blob.file.write.micros P50 : 7.298246 P95 : 9.771930 P99 : 9.991813 P100 : 16.000000 COUNT : 235 SUM : 1600 rocksdb.blobdb.blob.file.synced COUNT : 1 rocksdb.blobdb.blob.file.bytes.written COUNT : 34842 post-PR: rocksdb.blobdb.blob.file.write.micros P50 : 2.000000 P95 : 2.829360 P99 : 2.993779 P100 : 9.000000 COUNT : 707 SUM : 1614 - COUNT is higher and values are smaller as it includes header and footer write - COUNT is 3X higher due to each Append() count as one post-PR, while in pre-PR, 3 Append()s counts as one. See https://github.com/facebook/rocksdb/pull/11910/files#diff-32b811c0a1c000768cfb2532052b44dc0b3bf82253f3eab078e15ff201a0dabfL157-L164 rocksdb.blobdb.blob.file.synced COUNT : 1 (stay the same) rocksdb.blobdb.blob.file.bytes.written COUNT : 34842 (stay the same) ``` ``` Stacked Blob DB Run: ./db_bench --use_blob_db=1 --statistics=1 --benchmarks=fillseq --num=10000 --disable_auto_compactions=1 -write_buffer_size=100 --db=../db_bench pre-PR: rocksdb.blobdb.blob.file.write.micros P50 : 12.808042 P95 : 19.674497 P99 : 28.539683 P100 : 51.000000 COUNT : 10000 SUM : 140876 rocksdb.blobdb.blob.file.synced COUNT : 8 rocksdb.blobdb.blob.file.bytes.written COUNT : 1043445 post-PR: rocksdb.blobdb.blob.file.write.micros P50 : 1.657370 P95 : 2.952175 P99 : 3.877519 P100 : 24.000000 COUNT : 30001 SUM : 67924 - COUNT is higher and values are smaller as it includes header and footer write - COUNT is 3X higher due to each Append() count as one post-PR, while in pre-PR, 3 Append()s counts as one. See https://github.com/facebook/rocksdb/pull/11910/files#diff-32b811c0a1c000768cfb2532052b44dc0b3bf82253f3eab078e15ff201a0dabfL157-L164 rocksdb.blobdb.blob.file.synced COUNT : 8 (stay the same) rocksdb.blobdb.blob.file.bytes.written COUNT : 1043445 (stay the same) ``` ### Rehearsal CI stress test Trigger 3 full runs of all our CI stress tests ### Performance Flush ``` TEST_TMPDIR=/dev/shm ./db_basic_bench_pre_pr --benchmark_filter=ManualFlush/key_num:524288/per_key_size:256 --benchmark_repetitions=1000 -- default: 1 thread is used to run benchmark; enable_statistics = true Pre-pr: avg 507515519.3 ns 497686074,499444327,500862543,501389862,502994471,503744435,504142123,504224056,505724198,506610393,506837742,506955122,507695561,507929036,508307733,508312691,508999120,509963561,510142147,510698091,510743096,510769317,510957074,511053311,511371367,511409911,511432960,511642385,511691964,511730908, Post-pr: avg 511971266.5 ns, regressed 0.88% 502744835,506502498,507735420,507929724,508313335,509548582,509994942,510107257,510715603,511046955,511352639,511458478,512117521,512317380,512766303,512972652,513059586,513804934,513808980,514059409,514187369,514389494,514447762,514616464,514622882,514641763,514666265,514716377,514990179,515502408, ``` Compaction ``` TEST_TMPDIR=/dev/shm ./db_basic_bench_{pre|post}_pr --benchmark_filter=ManualCompaction/comp_style:0/max_data:134217728/per_key_size:256/enable_statistics:1 --benchmark_repetitions=1000 -- default: 1 thread is used to run benchmark Pre-pr: avg 495346098.30 ns 492118301,493203526,494201411,494336607,495269217,495404950,496402598,497012157,497358370,498153846 Post-pr: avg 504528077.20, regressed 1.85%. "ManualCompaction" include flush so the isolated regression for compaction should be around 1.85-0.88 = 0.97% 502465338,502485945,502541789,502909283,503438601,504143885,506113087,506629423,507160414,507393007 ``` Put with WAL (in case passing WriteOptions slows down this path even without collecting SST write stats) ``` TEST_TMPDIR=/dev/shm ./db_basic_bench_pre_pr --benchmark_filter=DBPut/comp_style:0/max_data:107374182400/per_key_size:256/enable_statistics:1/wal:1 --benchmark_repetitions=1000 -- default: 1 thread is used to run benchmark Pre-pr: avg 3848.10 ns 3814,3838,3839,3848,3854,3854,3854,3860,3860,3860 Post-pr: avg 3874.20 ns, regressed 0.68% 3863,3867,3871,3874,3875,3877,3877,3877,3880,3881 ``` Pull Request resolved: https://github.com/facebook/rocksdb/pull/11910 Reviewed By: ajkr Differential Revision: D49788060 Pulled By: hx235 fbshipit-source-id: 79e73699cda5be3b66461687e5147c2484fc5eff
2023-12-29 23:29:23 +00:00
// TODO: plumb Env::IOActivity, Env::IOPriority
Group rocksdb.sst.read.micros stat by IOActivity flush and compaction (#11288) Summary: **Context:** The existing stat rocksdb.sst.read.micros does not reflect each of compaction and flush cases but aggregate them, which is not so helpful for us to understand IO read behavior of each of them. **Summary** - Update `StopWatch` and `RandomAccessFileReader` to record `rocksdb.sst.read.micros` and `rocksdb.file.{flush/compaction}.read.micros` - Fixed the default histogram in `RandomAccessFileReader` - New field `ReadOptions/IOOptions::io_activity`; Pass `ReadOptions` through paths under db open, flush and compaction to where we can prepare `IOOptions` and pass it to `RandomAccessFileReader` - Use `thread_status_util` for assertion in `DbStressFSWrapper` for continuous testing on we are passing correct `io_activity` under db open, flush and compaction Pull Request resolved: https://github.com/facebook/rocksdb/pull/11288 Test Plan: - **Stress test** - **Db bench 1: rocksdb.sst.read.micros COUNT ≈ sum of rocksdb.file.read.flush.micros's and rocksdb.file.read.compaction.micros's.** (without blob) - May not be exactly the same due to `HistogramStat::Add` only guarantees atomic not accuracy across threads. ``` ./db_bench -db=/dev/shm/testdb/ -statistics=true -benchmarks="fillseq" -key_size=32 -value_size=512 -num=50000 -write_buffer_size=655 -target_file_size_base=655 -disable_auto_compactions=false -compression_type=none -bloom_bits=3 (-use_plain_table=1 -prefix_size=10) ``` ``` // BlockBasedTable rocksdb.sst.read.micros P50 : 2.009374 P95 : 4.968548 P99 : 8.110362 P100 : 43.000000 COUNT : 40456 SUM : 114805 rocksdb.file.read.flush.micros P50 : 1.871841 P95 : 3.872407 P99 : 5.540541 P100 : 43.000000 COUNT : 2250 SUM : 6116 rocksdb.file.read.compaction.micros P50 : 2.023109 P95 : 5.029149 P99 : 8.196910 P100 : 26.000000 COUNT : 38206 SUM : 108689 // PlainTable Does not apply ``` - **Db bench 2: performance** **Read** SETUP: db with 900 files ``` ./db_bench -db=/dev/shm/testdb/ -benchmarks="fillseq" -key_size=32 -value_size=512 -num=50000 -write_buffer_size=655 -disable_auto_compactions=true -target_file_size_base=655 -compression_type=none ```run till convergence ``` ./db_bench -seed=1678564177044286 -use_existing_db=true -db=/dev/shm/testdb -benchmarks=readrandom[-X60] -statistics=true -num=1000000 -disable_auto_compactions=true -compression_type=none -bloom_bits=3 ``` Pre-change `readrandom [AVG 60 runs] : 21568 (± 248) ops/sec` Post-change (no regression, -0.3%) `readrandom [AVG 60 runs] : 21486 (± 236) ops/sec` **Compaction/Flush**run till convergence ``` ./db_bench -db=/dev/shm/testdb2/ -seed=1678564177044286 -benchmarks="fillseq[-X60]" -key_size=32 -value_size=512 -num=50000 -write_buffer_size=655 -disable_auto_compactions=false -target_file_size_base=655 -compression_type=none rocksdb.sst.read.micros COUNT : 33820 rocksdb.sst.read.flush.micros COUNT : 1800 rocksdb.sst.read.compaction.micros COUNT : 32020 ``` Pre-change `fillseq [AVG 46 runs] : 1391 (± 214) ops/sec; 0.7 (± 0.1) MB/sec` Post-change (no regression, ~-0.4%) `fillseq [AVG 46 runs] : 1385 (± 216) ops/sec; 0.7 (± 0.1) MB/sec` Reviewed By: ajkr Differential Revision: D44007011 Pulled By: hx235 fbshipit-source-id: a54c89e4846dfc9a135389edf3f3eedfea257132
2023-04-21 16:07:18 +00:00
const ReadOptions read_options;
checksum_list->reset();
Status s;
std::unique_ptr<SequentialFileReader> file_reader;
{
std::unique_ptr<FSSequentialFile> file;
const std::shared_ptr<FileSystem>& fs = src_env->GetFileSystem();
s = fs->NewSequentialFile(abs_path,
fs->OptimizeForManifestRead(FileOptions()), &file,
nullptr /* dbg */);
if (!s.ok()) {
return s;
}
file_reader.reset(new SequentialFileReader(std::move(file), abs_path));
}
struct LogReporter : public log::Reader::Reporter {
Status* status_ptr;
virtual void Corruption(size_t /*bytes*/, const Status& st) override {
if (status_ptr->ok()) {
*status_ptr = st;
}
}
} reporter;
reporter.status_ptr = &s;
log::Reader reader(nullptr, std::move(file_reader), &reporter,
true /* checksum */, 0 /* log_number */);
Group rocksdb.sst.read.micros stat by IOActivity flush and compaction (#11288) Summary: **Context:** The existing stat rocksdb.sst.read.micros does not reflect each of compaction and flush cases but aggregate them, which is not so helpful for us to understand IO read behavior of each of them. **Summary** - Update `StopWatch` and `RandomAccessFileReader` to record `rocksdb.sst.read.micros` and `rocksdb.file.{flush/compaction}.read.micros` - Fixed the default histogram in `RandomAccessFileReader` - New field `ReadOptions/IOOptions::io_activity`; Pass `ReadOptions` through paths under db open, flush and compaction to where we can prepare `IOOptions` and pass it to `RandomAccessFileReader` - Use `thread_status_util` for assertion in `DbStressFSWrapper` for continuous testing on we are passing correct `io_activity` under db open, flush and compaction Pull Request resolved: https://github.com/facebook/rocksdb/pull/11288 Test Plan: - **Stress test** - **Db bench 1: rocksdb.sst.read.micros COUNT ≈ sum of rocksdb.file.read.flush.micros's and rocksdb.file.read.compaction.micros's.** (without blob) - May not be exactly the same due to `HistogramStat::Add` only guarantees atomic not accuracy across threads. ``` ./db_bench -db=/dev/shm/testdb/ -statistics=true -benchmarks="fillseq" -key_size=32 -value_size=512 -num=50000 -write_buffer_size=655 -target_file_size_base=655 -disable_auto_compactions=false -compression_type=none -bloom_bits=3 (-use_plain_table=1 -prefix_size=10) ``` ``` // BlockBasedTable rocksdb.sst.read.micros P50 : 2.009374 P95 : 4.968548 P99 : 8.110362 P100 : 43.000000 COUNT : 40456 SUM : 114805 rocksdb.file.read.flush.micros P50 : 1.871841 P95 : 3.872407 P99 : 5.540541 P100 : 43.000000 COUNT : 2250 SUM : 6116 rocksdb.file.read.compaction.micros P50 : 2.023109 P95 : 5.029149 P99 : 8.196910 P100 : 26.000000 COUNT : 38206 SUM : 108689 // PlainTable Does not apply ``` - **Db bench 2: performance** **Read** SETUP: db with 900 files ``` ./db_bench -db=/dev/shm/testdb/ -benchmarks="fillseq" -key_size=32 -value_size=512 -num=50000 -write_buffer_size=655 -disable_auto_compactions=true -target_file_size_base=655 -compression_type=none ```run till convergence ``` ./db_bench -seed=1678564177044286 -use_existing_db=true -db=/dev/shm/testdb -benchmarks=readrandom[-X60] -statistics=true -num=1000000 -disable_auto_compactions=true -compression_type=none -bloom_bits=3 ``` Pre-change `readrandom [AVG 60 runs] : 21568 (± 248) ops/sec` Post-change (no regression, -0.3%) `readrandom [AVG 60 runs] : 21486 (± 236) ops/sec` **Compaction/Flush**run till convergence ``` ./db_bench -db=/dev/shm/testdb2/ -seed=1678564177044286 -benchmarks="fillseq[-X60]" -key_size=32 -value_size=512 -num=50000 -write_buffer_size=655 -disable_auto_compactions=false -target_file_size_base=655 -compression_type=none rocksdb.sst.read.micros COUNT : 33820 rocksdb.sst.read.flush.micros COUNT : 1800 rocksdb.sst.read.compaction.micros COUNT : 32020 ``` Pre-change `fillseq [AVG 46 runs] : 1391 (± 214) ops/sec; 0.7 (± 0.1) MB/sec` Post-change (no regression, ~-0.4%) `fillseq [AVG 46 runs] : 1385 (± 216) ops/sec; 0.7 (± 0.1) MB/sec` Reviewed By: ajkr Differential Revision: D44007011 Pulled By: hx235 fbshipit-source-id: a54c89e4846dfc9a135389edf3f3eedfea257132
2023-04-21 16:07:18 +00:00
FileChecksumRetriever retriever(read_options, manifest_file_size,
*checksum_list);
retriever.Iterate(reader, &s);
assert(!retriever.status().ok() ||
manifest_file_size == std::numeric_limits<uint64_t>::max() ||
reader.LastRecordEnd() == manifest_file_size);
return retriever.status();
}
namespace {
static int RegisterFileChecksumGenFactories(ObjectLibrary& library,
const std::string& /*arg*/) {
library.AddFactory<FileChecksumGenFactory>(
FileChecksumGenCrc32cFactory::kClassName(),
[](const std::string& /*uri*/,
std::unique_ptr<FileChecksumGenFactory>* guard,
std::string* /* errmsg */) {
guard->reset(new FileChecksumGenCrc32cFactory());
return guard->get();
});
return 1;
}
} // namespace
Status FileChecksumGenFactory::CreateFromString(
const ConfigOptions& options, const std::string& value,
std::shared_ptr<FileChecksumGenFactory>* result) {
static std::once_flag once;
std::call_once(once, [&]() {
RegisterFileChecksumGenFactories(*(ObjectLibrary::Default().get()), "");
});
if (value == FileChecksumGenCrc32cFactory::kClassName()) {
*result = GetFileChecksumGenCrc32cFactory();
return Status::OK();
} else {
Status s = LoadSharedObject<FileChecksumGenFactory>(options, value, result);
return s;
}
}
} // namespace ROCKSDB_NAMESPACE