rocksdb/db/merge_helper.cc
Changyu Bi f02c708aa3 Consider range tombstone in compaction output file cutting (#10802)
Summary:
This PR is the first step for Issue https://github.com/facebook/rocksdb/issues/4811. Currently compaction output files are cut at point keys, and the decision is made mainly in `CompactionOutputs::ShouldStopBefore()`. This makes it possible for range tombstones to cause large compactions that does not respect `max_compaction_bytes`. For example, we can have a large range tombstone that overlaps with too many files from the next level. Another example is when there is a gap between a range tombstone and another key. The first issue may be more acceptable, as a lot of data is deleted. This PR address the second issue by calling `ShouldStopBefore()` for range tombstone start keys. The main change is for `CompactionIterator` to emit range tombstone start keys to be processed by `CompactionOutputs`. A new `CompactionMergingIterator` is introduced and only used under `CompactionIterator` for this purpose. Further improvement after this PR include 1) cut compaction output at some grandparent boundary key instead of at the next point key or range tombstone start key and 2) cut compaction output file within a large range tombstone (it may be easier and reasonable to only do it for range tombstones at the end of a compaction output).

Pull Request resolved: https://github.com/facebook/rocksdb/pull/10802

Test Plan:
- added unit tests in db_range_del_test.
- stress test: `python3 tools/db_crashtest.py whitebox --[simple|enable_ts] --verify_iterator_with_expected_state_one_in=5 --delrangepercent=5 --prefixpercent=2 --writepercent=58 --readpercen=21 --duration=36000 --range_deletion_width=1000000`

Reviewed By: ajkr, jay-zhuang

Differential Revision: D40308827

Pulled By: cbi42

fbshipit-source-id: a8fd6f70a3f09d0ef7a40e006f6c964bba8c00df
2022-12-15 09:11:54 -08:00

588 lines
23 KiB
C++

// Copyright (c) 2011-present, Facebook, Inc. All rights reserved.
// This source code is licensed under both the GPLv2 (found in the
// COPYING file in the root directory) and Apache 2.0 License
// (found in the LICENSE.Apache file in the root directory).
#include "db/merge_helper.h"
#include <string>
#include "db/blob/blob_fetcher.h"
#include "db/blob/blob_index.h"
#include "db/blob/prefetch_buffer_collection.h"
#include "db/compaction/compaction_iteration_stats.h"
#include "db/dbformat.h"
#include "db/wide/wide_column_serialization.h"
#include "logging/logging.h"
#include "monitoring/perf_context_imp.h"
#include "monitoring/statistics.h"
#include "port/likely.h"
#include "rocksdb/comparator.h"
#include "rocksdb/db.h"
#include "rocksdb/merge_operator.h"
#include "rocksdb/system_clock.h"
#include "table/format.h"
#include "table/internal_iterator.h"
namespace ROCKSDB_NAMESPACE {
MergeHelper::MergeHelper(Env* env, const Comparator* user_comparator,
const MergeOperator* user_merge_operator,
const CompactionFilter* compaction_filter,
Logger* logger, bool assert_valid_internal_key,
SequenceNumber latest_snapshot,
const SnapshotChecker* snapshot_checker, int level,
Statistics* stats,
const std::atomic<bool>* shutting_down)
: env_(env),
clock_(env->GetSystemClock().get()),
user_comparator_(user_comparator),
user_merge_operator_(user_merge_operator),
compaction_filter_(compaction_filter),
shutting_down_(shutting_down),
logger_(logger),
assert_valid_internal_key_(assert_valid_internal_key),
allow_single_operand_(false),
latest_snapshot_(latest_snapshot),
snapshot_checker_(snapshot_checker),
level_(level),
keys_(),
filter_timer_(clock_),
total_filter_time_(0U),
stats_(stats) {
assert(user_comparator_ != nullptr);
if (user_merge_operator_) {
allow_single_operand_ = user_merge_operator_->AllowSingleOperand();
}
}
Status MergeHelper::TimedFullMerge(const MergeOperator* merge_operator,
const Slice& key, const Slice* value,
const std::vector<Slice>& operands,
std::string* result, Logger* logger,
Statistics* statistics, SystemClock* clock,
Slice* result_operand,
bool update_num_ops_stats) {
assert(merge_operator != nullptr);
if (operands.empty()) {
assert(value != nullptr && result != nullptr);
result->assign(value->data(), value->size());
return Status::OK();
}
if (update_num_ops_stats) {
RecordInHistogram(statistics, READ_NUM_MERGE_OPERANDS,
static_cast<uint64_t>(operands.size()));
}
bool success = false;
Slice tmp_result_operand(nullptr, 0);
const MergeOperator::MergeOperationInput merge_in(key, value, operands,
logger);
MergeOperator::MergeOperationOutput merge_out(*result, tmp_result_operand);
{
// Setup to time the merge
StopWatchNano timer(clock, statistics != nullptr);
PERF_TIMER_GUARD(merge_operator_time_nanos);
// Do the merge
success = merge_operator->FullMergeV2(merge_in, &merge_out);
if (tmp_result_operand.data()) {
// FullMergeV2 result is an existing operand
if (result_operand != nullptr) {
*result_operand = tmp_result_operand;
} else {
result->assign(tmp_result_operand.data(), tmp_result_operand.size());
}
} else if (result_operand) {
*result_operand = Slice(nullptr, 0);
}
RecordTick(statistics, MERGE_OPERATION_TOTAL_TIME,
statistics ? timer.ElapsedNanos() : 0);
}
if (!success) {
RecordTick(statistics, NUMBER_MERGE_FAILURES);
return Status::Corruption("Error: Could not perform merge.");
}
return Status::OK();
}
Status MergeHelper::TimedFullMergeWithEntity(
const MergeOperator* merge_operator, const Slice& key, Slice base_entity,
const std::vector<Slice>& operands, std::string* result, Logger* logger,
Statistics* statistics, SystemClock* clock, bool update_num_ops_stats) {
WideColumns base_columns;
{
const Status s =
WideColumnSerialization::Deserialize(base_entity, base_columns);
if (!s.ok()) {
return s;
}
}
const bool has_default_column =
!base_columns.empty() && base_columns[0].name() == kDefaultWideColumnName;
Slice value_of_default;
if (has_default_column) {
value_of_default = base_columns[0].value();
}
std::string merge_result;
{
constexpr Slice* result_operand = nullptr;
const Status s = TimedFullMerge(
merge_operator, key, &value_of_default, operands, &merge_result, logger,
statistics, clock, result_operand, update_num_ops_stats);
if (!s.ok()) {
return s;
}
}
if (has_default_column) {
base_columns[0].value() = merge_result;
const Status s = WideColumnSerialization::Serialize(base_columns, *result);
if (!s.ok()) {
return s;
}
} else {
const Status s =
WideColumnSerialization::Serialize(merge_result, base_columns, *result);
if (!s.ok()) {
return s;
}
}
return Status::OK();
}
// PRE: iter points to the first merge type entry
// POST: iter points to the first entry beyond the merge process (or the end)
// keys_, operands_ are updated to reflect the merge result.
// keys_ stores the list of keys encountered while merging.
// operands_ stores the list of merge operands encountered while merging.
// keys_[i] corresponds to operands_[i] for each i.
//
// TODO: Avoid the snapshot stripe map lookup in CompactionRangeDelAggregator
// and just pass the StripeRep corresponding to the stripe being merged.
Status MergeHelper::MergeUntil(InternalIterator* iter,
CompactionRangeDelAggregator* range_del_agg,
const SequenceNumber stop_before,
const bool at_bottom,
const bool allow_data_in_errors,
const BlobFetcher* blob_fetcher,
const std::string* const full_history_ts_low,
PrefetchBufferCollection* prefetch_buffers,
CompactionIterationStats* c_iter_stats) {
// Get a copy of the internal key, before it's invalidated by iter->Next()
// Also maintain the list of merge operands seen.
assert(HasOperator());
keys_.clear();
merge_context_.Clear();
has_compaction_filter_skip_until_ = false;
assert(user_merge_operator_);
assert(user_comparator_);
const size_t ts_sz = user_comparator_->timestamp_size();
if (full_history_ts_low) {
assert(ts_sz > 0);
assert(ts_sz == full_history_ts_low->size());
}
bool first_key = true;
// We need to parse the internal key again as the parsed key is
// backed by the internal key!
// Assume no internal key corruption as it has been successfully parsed
// by the caller.
// original_key_is_iter variable is just caching the information:
// original_key_is_iter == (iter->key().ToString() == original_key)
bool original_key_is_iter = true;
std::string original_key = iter->key().ToString();
// Important:
// orig_ikey is backed by original_key if keys_.empty()
// orig_ikey is backed by keys_.back() if !keys_.empty()
ParsedInternalKey orig_ikey;
Status s = ParseInternalKey(original_key, &orig_ikey, allow_data_in_errors);
assert(s.ok());
if (!s.ok()) return s;
assert(kTypeMerge == orig_ikey.type);
bool hit_the_next_user_key = false;
int cmp_with_full_history_ts_low = 0;
for (; iter->Valid(); iter->Next(), original_key_is_iter = false) {
if (IsShuttingDown()) {
s = Status::ShutdownInProgress();
return s;
}
// Skip range tombstones emitted by the compaction iterator.
if (iter->IsDeleteRangeSentinelKey()) {
continue;
}
ParsedInternalKey ikey;
assert(keys_.size() == merge_context_.GetNumOperands());
Status pik_status =
ParseInternalKey(iter->key(), &ikey, allow_data_in_errors);
Slice ts;
if (pik_status.ok()) {
ts = ExtractTimestampFromUserKey(ikey.user_key, ts_sz);
if (full_history_ts_low) {
cmp_with_full_history_ts_low =
user_comparator_->CompareTimestamp(ts, *full_history_ts_low);
}
}
if (!pik_status.ok()) {
// stop at corrupted key
if (assert_valid_internal_key_) {
return pik_status;
}
break;
} else if (first_key) {
// If user-defined timestamp is enabled, we expect both user key and
// timestamps are equal, as a sanity check.
assert(user_comparator_->Equal(ikey.user_key, orig_ikey.user_key));
first_key = false;
} else if (!user_comparator_->EqualWithoutTimestamp(ikey.user_key,
orig_ikey.user_key) ||
(ts_sz > 0 &&
!user_comparator_->Equal(ikey.user_key, orig_ikey.user_key) &&
cmp_with_full_history_ts_low >= 0)) {
// 1) hit a different user key, or
// 2) user-defined timestamp is enabled, and hit a version of user key NOT
// eligible for GC, then stop right here.
hit_the_next_user_key = true;
break;
} else if (stop_before > 0 && ikey.sequence <= stop_before &&
LIKELY(snapshot_checker_ == nullptr ||
snapshot_checker_->CheckInSnapshot(ikey.sequence,
stop_before) !=
SnapshotCheckerResult::kNotInSnapshot)) {
// hit an entry that's possibly visible by the previous snapshot, can't
// touch that
break;
}
// At this point we are guaranteed that we need to process this key.
assert(IsValueType(ikey.type));
if (ikey.type != kTypeMerge) {
// hit a put/delete/single delete
// => merge the put value or a nullptr with operands_
// => store result in operands_.back() (and update keys_.back())
// => change the entry type to kTypeValue for keys_.back()
// We are done! Success!
// If there are no operands, just return the Status::OK(). That will cause
// the compaction iterator to write out the key we're currently at, which
// is the put/delete we just encountered.
if (keys_.empty()) {
return s;
}
// TODO(noetzli) If the merge operator returns false, we are currently
// (almost) silently dropping the put/delete. That's probably not what we
// want. Also if we're in compaction and it's a put, it would be nice to
// run compaction filter on it.
std::string merge_result;
if (range_del_agg &&
range_del_agg->ShouldDelete(
ikey, RangeDelPositioningMode::kForwardTraversal)) {
s = TimedFullMerge(user_merge_operator_, ikey.user_key, nullptr,
merge_context_.GetOperands(), &merge_result, logger_,
stats_, clock_,
/* result_operand */ nullptr,
/* update_num_ops_stats */ false);
} else if (ikey.type == kTypeValue) {
const Slice val = iter->value();
s = TimedFullMerge(user_merge_operator_, ikey.user_key, &val,
merge_context_.GetOperands(), &merge_result, logger_,
stats_, clock_,
/* result_operand */ nullptr,
/* update_num_ops_stats */ false);
} else if (ikey.type == kTypeBlobIndex) {
BlobIndex blob_index;
s = blob_index.DecodeFrom(iter->value());
if (!s.ok()) {
return s;
}
FilePrefetchBuffer* prefetch_buffer =
prefetch_buffers ? prefetch_buffers->GetOrCreatePrefetchBuffer(
blob_index.file_number())
: nullptr;
uint64_t bytes_read = 0;
assert(blob_fetcher);
PinnableSlice blob_value;
s = blob_fetcher->FetchBlob(ikey.user_key, blob_index, prefetch_buffer,
&blob_value, &bytes_read);
if (!s.ok()) {
return s;
}
if (c_iter_stats) {
++c_iter_stats->num_blobs_read;
c_iter_stats->total_blob_bytes_read += bytes_read;
}
s = TimedFullMerge(user_merge_operator_, ikey.user_key, &blob_value,
merge_context_.GetOperands(), &merge_result, logger_,
stats_, clock_,
/* result_operand */ nullptr,
/* update_num_ops_stats */ false);
} else if (ikey.type == kTypeWideColumnEntity) {
s = TimedFullMergeWithEntity(
user_merge_operator_, ikey.user_key, iter->value(),
merge_context_.GetOperands(), &merge_result, logger_, stats_,
clock_, /* update_num_ops_stats */ false);
} else {
s = TimedFullMerge(user_merge_operator_, ikey.user_key, nullptr,
merge_context_.GetOperands(), &merge_result, logger_,
stats_, clock_,
/* result_operand */ nullptr,
/* update_num_ops_stats */ false);
}
// We store the result in keys_.back() and operands_.back()
// if nothing went wrong (i.e.: no operand corruption on disk)
if (s.ok()) {
// The original key encountered
original_key = std::move(keys_.back());
orig_ikey.type = ikey.type == kTypeWideColumnEntity
? kTypeWideColumnEntity
: kTypeValue;
UpdateInternalKey(&original_key, orig_ikey.sequence, orig_ikey.type);
keys_.clear();
merge_context_.Clear();
keys_.emplace_front(std::move(original_key));
merge_context_.PushOperand(merge_result);
}
// move iter to the next entry
iter->Next();
return s;
} else {
// hit a merge
// => if there is a compaction filter, apply it.
// => check for range tombstones covering the operand
// => merge the operand into the front of the operands_ list
// if not filtered
// => then continue because we haven't yet seen a Put/Delete.
//
// Keep queuing keys and operands until we either meet a put / delete
// request or later did a partial merge.
Slice value_slice = iter->value();
// add an operand to the list if:
// 1) it's included in one of the snapshots. in that case we *must* write
// it out, no matter what compaction filter says
// 2) it's not filtered by a compaction filter
CompactionFilter::Decision filter =
ikey.sequence <= latest_snapshot_
? CompactionFilter::Decision::kKeep
: FilterMerge(orig_ikey.user_key, value_slice);
if (filter != CompactionFilter::Decision::kRemoveAndSkipUntil &&
range_del_agg != nullptr &&
range_del_agg->ShouldDelete(
iter->key(), RangeDelPositioningMode::kForwardTraversal)) {
filter = CompactionFilter::Decision::kRemove;
}
if (filter == CompactionFilter::Decision::kKeep ||
filter == CompactionFilter::Decision::kChangeValue) {
if (original_key_is_iter) {
// this is just an optimization that saves us one memcpy
keys_.emplace_front(original_key);
} else {
keys_.emplace_front(iter->key().ToString());
}
if (keys_.size() == 1) {
// we need to re-anchor the orig_ikey because it was anchored by
// original_key before
pik_status =
ParseInternalKey(keys_.back(), &orig_ikey, allow_data_in_errors);
pik_status.PermitUncheckedError();
assert(pik_status.ok());
}
if (filter == CompactionFilter::Decision::kKeep) {
merge_context_.PushOperand(
value_slice, iter->IsValuePinned() /* operand_pinned */);
} else {
assert(filter == CompactionFilter::Decision::kChangeValue);
// Compaction filter asked us to change the operand from value_slice
// to compaction_filter_value_.
merge_context_.PushOperand(compaction_filter_value_, false);
}
} else if (filter == CompactionFilter::Decision::kRemoveAndSkipUntil) {
// Compaction filter asked us to remove this key altogether
// (not just this operand), along with some keys following it.
keys_.clear();
merge_context_.Clear();
has_compaction_filter_skip_until_ = true;
return s;
}
}
}
if (cmp_with_full_history_ts_low >= 0) {
size_t num_merge_operands = merge_context_.GetNumOperands();
if (ts_sz && num_merge_operands > 1) {
// We do not merge merge operands with different timestamps if they are
// not eligible for GC.
ROCKS_LOG_ERROR(logger_, "ts_sz=%d, %d merge oprands",
static_cast<int>(ts_sz),
static_cast<int>(num_merge_operands));
assert(false);
}
}
if (merge_context_.GetNumOperands() == 0) {
// we filtered out all the merge operands
return s;
}
// We are sure we have seen this key's entire history if:
// at_bottom == true (this does not necessarily mean it is the bottommost
// layer, but rather that we are confident the key does not appear on any of
// the lower layers, at_bottom == false doesn't mean it does appear, just
// that we can't be sure, see Compaction::IsBottommostLevel for details)
// AND
// we have either encountered another key or end of key history on this
// layer.
// Note that if user-defined timestamp is enabled, we need some extra caution
// here: if full_history_ts_low is nullptr, or it's not null but the key's
// timestamp is greater than or equal to full_history_ts_low, it means this
// key cannot be dropped. We may not have seen the beginning of the key.
//
// When these conditions are true we are able to merge all the keys
// using full merge.
//
// For these cases we are not sure about, we simply miss the opportunity
// to combine the keys. Since VersionSet::SetupOtherInputs() always makes
// sure that all merge-operands on the same level get compacted together,
// this will simply lead to these merge operands moving to the next level.
bool surely_seen_the_beginning =
(hit_the_next_user_key || !iter->Valid()) && at_bottom &&
(ts_sz == 0 || cmp_with_full_history_ts_low < 0);
if (surely_seen_the_beginning) {
// do a final merge with nullptr as the existing value and say
// bye to the merge type (it's now converted to a Put)
assert(kTypeMerge == orig_ikey.type);
assert(merge_context_.GetNumOperands() >= 1);
assert(merge_context_.GetNumOperands() == keys_.size());
std::string merge_result;
s = TimedFullMerge(
user_merge_operator_, orig_ikey.user_key, nullptr,
merge_context_.GetOperands(), &merge_result, logger_, stats_, clock_,
/* result_operand */ nullptr, /* update_num_ops_stats */ false);
if (s.ok()) {
// The original key encountered
// We are certain that keys_ is not empty here (see assertions couple of
// lines before).
original_key = std::move(keys_.back());
orig_ikey.type = kTypeValue;
UpdateInternalKey(&original_key, orig_ikey.sequence, orig_ikey.type);
keys_.clear();
merge_context_.Clear();
keys_.emplace_front(std::move(original_key));
merge_context_.PushOperand(merge_result);
}
} else {
// We haven't seen the beginning of the key nor a Put/Delete.
// Attempt to use the user's associative merge function to
// merge the stacked merge operands into a single operand.
s = Status::MergeInProgress();
if (merge_context_.GetNumOperands() >= 2 ||
(allow_single_operand_ && merge_context_.GetNumOperands() == 1)) {
bool merge_success = false;
std::string merge_result;
{
StopWatchNano timer(clock_, stats_ != nullptr);
PERF_TIMER_GUARD(merge_operator_time_nanos);
merge_success = user_merge_operator_->PartialMergeMulti(
orig_ikey.user_key,
std::deque<Slice>(merge_context_.GetOperands().begin(),
merge_context_.GetOperands().end()),
&merge_result, logger_);
RecordTick(stats_, MERGE_OPERATION_TOTAL_TIME,
stats_ ? timer.ElapsedNanosSafe() : 0);
}
if (merge_success) {
// Merging of operands (associative merge) was successful.
// Replace operands with the merge result
merge_context_.Clear();
merge_context_.PushOperand(merge_result);
keys_.erase(keys_.begin(), keys_.end() - 1);
}
}
}
return s;
}
MergeOutputIterator::MergeOutputIterator(const MergeHelper* merge_helper)
: merge_helper_(merge_helper) {
it_keys_ = merge_helper_->keys().rend();
it_values_ = merge_helper_->values().rend();
}
void MergeOutputIterator::SeekToFirst() {
const auto& keys = merge_helper_->keys();
const auto& values = merge_helper_->values();
assert(keys.size() == values.size());
it_keys_ = keys.rbegin();
it_values_ = values.rbegin();
}
void MergeOutputIterator::Next() {
++it_keys_;
++it_values_;
}
CompactionFilter::Decision MergeHelper::FilterMerge(const Slice& user_key,
const Slice& value_slice) {
if (compaction_filter_ == nullptr) {
return CompactionFilter::Decision::kKeep;
}
if (stats_ != nullptr && ShouldReportDetailedTime(env_, stats_)) {
filter_timer_.Start();
}
compaction_filter_value_.clear();
compaction_filter_skip_until_.Clear();
auto ret = compaction_filter_->FilterV2(
level_, user_key, CompactionFilter::ValueType::kMergeOperand, value_slice,
&compaction_filter_value_, compaction_filter_skip_until_.rep());
if (ret == CompactionFilter::Decision::kRemoveAndSkipUntil) {
if (user_comparator_->Compare(*compaction_filter_skip_until_.rep(),
user_key) <= 0) {
// Invalid skip_until returned from compaction filter.
// Keep the key as per FilterV2 documentation.
ret = CompactionFilter::Decision::kKeep;
} else {
compaction_filter_skip_until_.ConvertFromUserKey(kMaxSequenceNumber,
kValueTypeForSeek);
}
}
if (stats_ != nullptr && ShouldReportDetailedTime(env_, stats_)) {
total_filter_time_ += filter_timer_.ElapsedNanosSafe();
}
return ret;
}
} // namespace ROCKSDB_NAMESPACE